1) Nope you shouldn't have a prob - after you've cloned all you have to do when you restart is hold down the option key on the bong. Choose which disc you want to boot off and your cloned OS will load. Test it to make sure you're happy that all is ok.
Then go to apps>utilities>disc utility. Choose your disc you want to erase and click options> choose write zero's. Then erase.
2) Tiger installer will install all the Apple apps that come with the OS if you choose easy or basic (I forget) - all yer iLife stuff, Mail, QT Safari etc and forever. The apps you'll have to install will be things like Photoshop, FCP whatever.
The Tiger installer will create a folder at the root of your drive called Applications and throw the apps in there. All your manually installed stuff should go into that folder as well.
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